m4ri: update to 20250128.

common/shlibs

@@ -4251,7 +4251,7 @@ libpolys-4.4.0.so singular-4.4.0_1
 libsingular_resources-4.4.0.so singular-4.4.0_1
 libbrial.so.3 brial-1.2.10_1
 libbrial_groebner.so.3 brial-1.2.10_1
-libm4ri-0.0.20200125.so m4ri-20200125_1
+libm4ri.so.1 m4ri-20250128_1
 libm4rie-0.0.20200125.so m4rie-20200125_1
 libptytty.so.0 libptytty-2.0_1
 libcoeurl.so.0.3 coeurl-0.3.0_1

srcpkgs/m4ri/patches/28-fix-overflow-32bit.patch

@@ -0,0 +1,45 @@
+From b178ed36bdd841a76b6595edb77631886e099406 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
+Date: Mon, 3 Feb 2025 17:19:37 -0300
+Subject: [PATCH] Fix overflows in `mzd_init()`
+
+---
+ m4ri/mmc.h | 4 ++++
+ m4ri/mzd.c | 5 ++---
+ 2 files changed, 6 insertions(+), 3 deletions(-)
+
+diff --git a/m4ri/mmc.h b/m4ri/mmc.h
+index e6db4ca..3e97391 100644
+--- a/m4ri/mmc.h
++++ b/m4ri/mmc.h
+@@ -72,6 +72,10 @@ typedef struct _mm_block {
+  * \return Pointer to allocated memory block.
+  */
+ static inline void *m4ri_mmc_calloc(size_t count, size_t size) {
++  if (size && count > SIZE_MAX/size) {
++      m4ri_die("m4ri_mmc_calloc: overflow in multiplication\n");
++      return NULL; /* unreachable */
++  }
+   size_t total_size = count * size;
+   void *ret         = m4ri_mmc_malloc(total_size);
+   memset((char *)ret, 0, total_size);
+diff --git a/m4ri/mzd.c b/m4ri/mzd.c
+index ba04b7c..ac62c5c 100644
+--- a/m4ri/mzd.c
++++ b/m4ri/mzd.c
+@@ -144,13 +144,12 @@ mzd_t *mzd_init(rci_t r, rci_t c) {
+   mzd_t *A = mzd_t_malloc();
+   A->nrows         = r;
+   A->ncols         = c;
+-  A->width         = (c + m4ri_radix - 1) / m4ri_radix;
++  A->width         = c > 0 ? (c - 1) / m4ri_radix + 1 : 0;
+   A->rowstride     = ((A->width & 1) == 0) ? A->width : A->width + 1;
+   A->high_bitmask  = __M4RI_LEFT_BITMASK(c % m4ri_radix);
+   A->flags         = (A->high_bitmask != m4ri_ffff) ? mzd_flag_nonzero_excess : 0;
+   if (r && c) {
+-    size_t block_words = r * A->rowstride;
+-    A->data = m4ri_mmc_calloc(block_words, sizeof(word));
++    A->data = m4ri_mmc_calloc(r, sizeof(word) * A->rowstride);
+   } else {
+     A->data = NULL;
+   }

srcpkgs/m4ri/patches/m4ri-simd_cflags_in_tests.patch

@@ -1,11 +0,0 @@
---- a/tests/Makefile.in	2020-01-25 01:34:59.000000000 -0300
-+++ b/tests/Makefile.in	2021-11-10 08:13:46.505793446 -0300
-@@ -609,7 +609,7 @@
- TOPBUILDDIR = $(builddir)/..
- DEFINES = 
- # include TOPBUILDIR for m4ri_config.h
--AM_CFLAGS = -I$(TOPSRCDIR) -I$(TOPBUILDDIR) -D_XOPEN_SOURCE=600 $(DEFINES) @OPENMP_CFLAGS@ @PAPI_CFLAGS@
-+AM_CFLAGS = -I$(TOPSRCDIR) -I$(TOPBUILDDIR) -D_XOPEN_SOURCE=600 $(DEFINES) $(SIMD_CFLAGS) $(OPENMP_CFLAGS) $(PAPI_CFLAGS)
- STAGEDIR := $(realpath -s $(TOPBUILDDIR)/.libs)
- AM_LDFLAGS = -L$(STAGEDIR) -Wl,-rpath,$(STAGEDIR) -lm4ri $(LIBM) @PAPI_LDFLAGS@ @PAPI_LIBS@ -no-install
- test_smallops_SOURCES = test_smallops.c testing.c testing.h

srcpkgs/m4ri/template

@@ -1,17 +1,24 @@
 # Template file for 'm4ri'
 pkgname=m4ri
-version=20200125
+version=20250128
-revision=2
+revision=1
 build_style=gnu-configure
-configure_args="--enable-openmp ax_cv_have_sse3_ext=no ax_cv_have_ssse3_ext=no"
+# use defaults for cache sizes instead of build machine
+configure_args="--enable-openmp --with-cachesize=0:0:0"
 hostmakedepends="pkg-config"
 makedepends="libgomp-devel libpng-devel"
 short_desc="Library for fast arithmetic with dense matrices over GF(2)"
-maintainer="Eloi Torrents <eloitorrentsj@gmail.com>"
+maintainer="Eloi Torrents <eloitor@duck.com>"
 license="GPL-2.0-or-later"
-homepage="https://bitbucket.org/malb/m4ri"
+homepage="https://github.com/malb/m4ri"
-distfiles="https://bitbucket.org/malb/m4ri/downloads/${pkgname}-${version}.tar.gz"
+changelog="https://github.com/malb/m4ri#history"
-checksum=0dfb34aed351882a0f2281535ea6f81c690a5efeb14edab131d9ba0dffe44863
+distfiles="https://github.com/malb/m4ri/releases/download/${version}/m4ri-${version}.tar.gz"
+checksum=b4098db651483c0e1506c16f79091eba02f41dadbacf1bb25be8eb97e5515f96
+
+pre_check() {
+	# the testsuite is very slow when run in parallel!
+	unset makejobs
+}
 
 m4ri-devel_package() {
 	short_desc+=" - development files"